Now, I understand that most users are flummoxed by high school algebra, but you shouldnt underestimate the capacity of users to doggedly move bits and pieces around until they work, even if they arent entirely sure how something works.

Heres a typical example from Apples Address Book application:

You can use the plus and minus buttons to add constraints and you can choose to match all or just one. Its tremendously limited; you cant even say this and (that or those). The problem is that the form metaphor doesnt scale structure well at all, and its a major limitation of all GUIs that are beholden to it.

But this is a good example of the task Im trying to improve: letting the user build a simple expression, whether its criteria for a query or a calculated field or something related.

Spreadsheets are a more advanced system than what Im trying to handle. Heres what OpenOffices function wizard looks like:

The Function Wizard is more geared towards helping a proficient user (probably an Excel user) migrate to OpenOffice. As such, the user is expected to know some basic concepts of functions, and probably only needs help in a few areas.

The structure diagram doesnt explain why anything fits where it does and doesnt allow for manipulation. The right pane is quite helpful in showing the parameters of the function in question. Also, due to its being geared to a proficient user, the function wizard doesnt provide assistance with arithmetic. I had to guess that ^ was the exponent operator.

One poor assumption the designers make, I think, is that they dont handle types very well. In the case of OpenOffice, they were building on the design decisions made twenty years ago with Microsoft Excel to use a typeless system, and it means that the system knows theres a type and the user often needs to know theres a type, but no one wants to admit it.

This is the Query Builder from OpenOffice and shows a very popular way of building an expression. This is optimized towards the common case where users have trouble with complex SQL constructs like grouping. One interesting facet of this is the criterion section. You get conjunction over different fields and disjunction over that, but you really cant tell just by looking at it. Its also quite hard to negate a section of the expression; youd have to know DeMorgans law to do it. You also simply have to know that you can enter < 5 in the criteria, which is not a standard mathematical expression at all.

Assuming the interface was simplified to only handle basic mathematical expressions, such an interface still runs right into the WYSIWYG Productivity Sinkhole. Modern applications let us lay out documents to pixel perfect precision, and this is often a huge waste of time. Obviously, in some cases its worth it to make something look good, but I want users to be able to create an expression without worrying about exactly how it looks.

Its very hard to allow a person to place components anywhere on the screen and avoid having to tediously move stuff around to no effect.

To keep things tidy, we bend the metaphor a bit and allow puzzle pieces to resize dynamically in width, like so:

I didnt show the nibs in that diagram, but as you can see, the plus operator is wide enough to accommodate all its arguments. Also, the semantics for dragging are fairly straightforward since nibs fit together and pieces resize as necessary. In general, picking up an operator picks up all its precedents. This does mean that you can have separate groups doing separate things, and I may have a receptacle at the bottom of the canvas to set one group to be the official result. Allowing other groups enables the user to build a larger expression from smaller ones, and potentially allows for prefabricated templates. But because pieces fit together and resize automatically and predictably, theres no messing around with the layout.

Heres the layout diagram for an operator piece:

Its pretty easy to generate Bézier paths using Javas 2D package, and the squiggly puzzle piece lines are going to be fairly subtle so

Although Im going to experiment with a few different layouts, my intuition is that a simple canvas and toolbox approach is best. An empty component might look like so:

Ill be posting more on this, hopefully a timetable to get a test applet set up, or you can keep an eye on the github repository.

Posted in User Interface Tagged: Java, project, Swing, User Interface ]]>

I understand the desire to restrict the problem to a reasonable domain, but some of the suggestions Ive read seem unrealistic, such as its critical that one researcher only gets one [digital scientist identifier]. (source) That seems like it depends too much on too many people doing the right thing when theres no reason they should really care to do the right thing.

This really lets the cat out of the bag when it comes to identifying researchers because the whole scientific process expands, but I think most scientists agree that it ought to. A large problem in science is that theres no serious mechanism for scientists to address falsehoods in the popular media. And while the scientific community may form a consensus on a particular issue, its difficult to express this. For example, to express a consensus on evolution a group of scientists launched Project Steve, but that only worked because the consensus was overwhelming.

The larger process begins to make sense if instead of following the publishing model we look at a more general model of interaction made of up smaller actions. Rather than articles as the unit of publishing, you might break it down as far as observations, assertions, arguments, criticisms, etc. Consider a hypothetical chain of events:

- A researcher generates statistical data on cancerous growths.
- The author summarizes the work for a paper.
- The paper is published in a journal.
- An advocacy group cites the paper in a press release.
- The press release is picked up by a journalist.
- A legislator reads the press release.

Now, imagine if a concerned citizen hears about the new law and wants to investigate. There is virtually no way to go back and find the original research and determine if the law in question actually reflects the original science in any way.

To a large extent, the value of research is what people write about it and the actions they take because of that.

After coming back to finish writing this post, I found a very interesting interview on a technology called crossref that does pretty much what Im asking for. I guess great minds think alike

Posted in Uncategorized Tagged: Identity, Science, Workflow ]]>

The basic concept behind a join is that given two tables you can match rows based on some common attribute.

It’s simple enough in principle:

Join these two tables and you get an extended list of students and their professors:

It’s straightforward enough to think of stepping through each student and looking for the corresponding professor based on the course.

There’s also another way to use a join that might be a little surprising:

This involves joining against an infinite table of areas. It’s really just the times table, only laid out differently than the way it’s traditionally done in elementary school. The idea is that rather than have each row stored on disk, it’s done by lookup data up by passing it to a mathematical function.

Joining against it ought to work like any table. After all, when you look up the living room, you have

There are problems, though. If it’s going to be just like any other table, you ought to be able to join against any columns. Say you had a table with

The reason I bring up virtual tables, though, is that it shows how a join can’t be expressed as something as simple as stepping through rows and finding matches. While that seems simple, it’s actually adding complexity.

Explaining why takes some doing. We start with the cartesian product.

Let’s go to something basic, the number line:

For now, just consider one point, say

It’s like a little table:

Let’s add another dimension:

This is another way of saying the same thing. Since we haven’t aid anything about

What if we leave

Right, now let’s ask what happens if (

It makes sense graphically. After all, I simply superimposed each set of lines and highlighted the points that match. Here’s what it looks like as tables:

Recall that the final table is the same as this:

(

If you don’t remember your boolean algebra, what’s happening is simple distribution:

(a or b or c) and (d or e) = (a and d) or (a and e) or (b and d) or (b and e) or (c and d) or (c and e)

This might look more familiar:

(a + b + c) * (d + e) = a*d + a*e + b*d + b*e + c*d + c*e

Now, I’m not saying they’re the same thing, not by a long shot. For example, you certainly can’t say this:

(5 * 3) + (2 *4) = (5 + 2) * (5 + 4) * (3 + 2) * (3 + 4)

… but you can do that in boolean algebra. The point is that the pattern is the same, and that pattern arises because the cartesian product is essentially the result of asking about this

The two parts of a join are to perform a cartesian product and then to “filter” the results. Recall the first example:

So, through the process of performing the join we generated every possible combination, and then threw out combinations that didn’t match. That makes sense, but why?

Consider the first row of Students. I’ll claim we’re saying, “Dennis is a student AND the grade is A+ AND the course is math.” So to join Dennis with Literature we’d have to say, “Dennis is a student AND the grade is A+ AND the course is math AND the course is literature AND the professor is Dr. Black AND the Credits are 3.”

By my claim, it’s clear that saying the course is two different things is a logical contradiction. Let’s also recall that the table is really just row OR row OR row. So the rows that are logical contradictions are false values, and when you have false OR true, you can just throw out the false values.

But how can I claim the ANDs I referred to? Consider the table decomposed like so:

These are simple little one column, one row tables. I call them “pairs” because they’re essentially a key-value pair, but they’re basically the smallest unit the relational algebra can address.

Normally, we don’t do cartesian products because the result becomes exponentially large. If you have two tables with 10 rows, the result is 100 rows.

But 1 * 1 * 1 is just 1! So each row is just the cartesian product of its pairs:

And since the whole table can be thought of as the union of its rows. This is a kind of normal form, I call it the “relational sum of products” which should be familiar to anyone whose done circuit design. More interesting is the fact that there actually is a “relational product of sums,” but I’ll get to that later.

The goal with this article was, hopefully, to get into the fine detail of why joins work the way they do. What we’ve covered is the two stages of a join: cartesian product and filtering, and shown the theory of why they work that way, and also, hopefully, made the case that there’s some simple and elegant math behind it. In a future article, I’ll explore the conjoin and disjoin operators and show how various operators are derived from these, and propose a negate operator.

Posted in Theory Tagged: Relational Algebra ]]>

And from the first line, it doesnt make sense:

Recently, a lot of new non-relational databases have cropped up both inside and outside the cloud. One key message this sends is, “if you want vast, on-demand scalability, you need a non-relational database”.

After that complete non sequitur:

During this time, several so-called revolutions flared up briefly, all of which were supposed to spell the end of the relational database. All of those revolutions fizzled out, of course, and none even made a dent in the dominance of relational databases.

If hes just saying that all the silly articles predicting that the relational model was doomed were completely wrong, well, that seems vaguely familiar. But if hes saying that non-relational technologies were attempted and then abandoned, Id have to take issue with that. OODBMSs should count as one of the so-called revolutions and theyre still around and are, in fact, incorporated in many mainstream SQL DBMSs. Most of the other trendy technologies I can think of, such as XML or some of the data warehousing tech, were never really considered direct competitors to the relational model.

The lesson here is that the marketplace of human ingenuity is always bigger than your imagination and theres plenty of space for all these various technologies. And, to be clear, Im not pooh-poohing these technologies, rather, Id like to follow them more closely because I think theyre extremely interesting. My argument is that they arent going to shift relational DBMS technology because they dont compete with it.

What exactly is it that the relational database dominates, and how does it dominate? The what of the answer isnt way out there, and it surprises me that a business guy like Mr. Blain missed it.

Here’s the basic business reason for a SQL DBMS: your business has many processes that involve many (metaphorical) moving parts and you need to capture that logic, known as business logic, in a set of rules. You need your data to conform, at all times, to those rules.

This isn’t to say that there isn’t a whole lot of other data that can’t be stored in other ways or even must be stored in other ways, but here are a few of the things that businesses have to worry about:

- Tracking employees.
- Paying taxes.
- Government regulations.
- Tracking customers.
- Tracking shipments.
- Managing vendors.

This stuff goes back to before the Roman Empire, and, if anything, it’s only going to get more regulated and more complex, which means the need to track business logic, and thus the case for the relational DBMS, will only grow.

The second half of the answer, the how, is that the relational model is well defined. DBMSs using SQL (which is pretty much all of them) dont use the relational model but what is often referred to as the SQL model. The differences between the relational model and the SQL model are a little arcane (and Ill probably touch on them in this blog) but they are significant enough that its simply wrong to conflate the two.

Many of the competitors to the relational model, such as the old Pick systems (still around, incidentally) used a model that was not well defined. So whats wrong with loosely defined systems? There are a few, but Id argue the complete and total lack of interoperability is the problem. At first blush XML refutes this, but really, it proves it.

What did we have pre-XML? A complete mess of binary formats, and the n-squared problem of writing translators for all of them. Did you ever try these translators? Even simply opening a Word document in a later version tends to destroy the underlying data.

Along comes the web and the successful tag structure of HTML is generalized to arbitrary data. LISP advocates complain that its just symbolic expressions with angle brackets.

So now we have a post-XML world. DOC has become DOCX and whats changed? Well, loading and saving documents is somewhat more robust because some of the logic has been offloaded to reusable libraries. And now you can use XSLT to transform documents.

But the original problem remains: you have a whole mess of incompatible file formats and n-squared translators that dont actually work.

The various key-value stores are very new, and it remains to be seen how well they will work together, but I havent seen any evidence that they even attempt to address the issue.

(Updates: 4 Mar: formatting.)

Posted in Uncategorized Tagged: Cloud computing, DOOM! ]]>

Naming things can be difficult. One approach is to have a centralized system, the way you get a book gets an ISBN. The downside is that some central agency has to be notified. The other approach is to have many agencies and let each allocate a range of numbers; this is the way the Social Security Administration operated initially and this is the way IP addresses are allocated. These systems are more on the end of a spectrum that gains in terms of shorter identifier length but loses in terms of centralization.

Another approach is to pick a big number at random, big enough that the odds that two numbers will collide are vanishingly small. The downside is that it’s a big, random number, which is difficult for humans to work with. The upside is that you don’t have to plan anything or do any synchronization: it’s just picking a number at random. This is common in nature: proteins on a cell contain identifying information that is used by the immune system to determine friend and foe.

Many identifying systems that made poor assumptions in planning have collisions. IP4 has this problem: the countries that grabbed blocks early on have lots of blocks of addresses and countries that are only now expanding their usage, like China and India, have relatively few.

GUID stands for Globally Unique Identifier; it’s a more common term than Universally Unique Identifier, but they mean essentially the same thing. And to be clear, there are a number of ways of designing a GUID and different people with different needs have arrived at various solutions concurrently. To keep this article to a reasonable length, I’m only addressing GUIDs as defined by RFC 4122, and even then only a specific type of GUID.

By a minimal reading of the spec, a GUID is 128 bits of random binary data that doesn’t equal anything else unless you copy it bit for bit, and for most software developers, that’s all they care about. Going deeper into the standards, the layout shows the various techniques that the designers used to ensure uniqueness.

Section 4.2.1 of the RFC describes the actual layout, though you have to read further because the layout is used differently by different algorithms. The basic algorithm uses the precise time and a 48-bit “spatial node” handed out by a central service. The big number picked at random method that I’m addressing with this article is under section 4.4, Algorithms for Creating a UUID from Truly Random or Pseudo-Random Numbers. When you parse what they mean (or just look at the source code in the appendix) you can see that of 128 bits, 28 are fixed and 100 bits are completely random.

It’s easy to make the trivial observation, as many articles do, that the odds of picking two numbers from 0 through 2^{100} – 1 are ridiculously small. They are easy to calculate: we’ll call the first number you pick ‘n’. It doesn’t matter what n is, just that it’s a number, because it has no effect on what the second number will be. The odds that the second number you pick will be equal to ‘n’ are 1 : 2^{100} – 1.

(Caveat: I’m making a big assumption here: that you used 100 bits of uniformly distributed random data. Although there are very high quality RNGs available, uniformity of the distribution may require specialized algorithms, hardware, or simply more CPU time. On the bright side, all of those things are often available.)

But we’re not using just 2 GUIDs at a time. What are the odds if we pick out many GUIDs?

We’ll try picking three. Of three GUIDs, we’ll pick 3 from 2^{100}, which we’ll call ‘s’ to make it easier to read. The logic works like so:

- Pick #1. Odds that it is the same as anything else are 0, trivially.
- Pick #2. Odds are 1 in s that it is the same as #1, s-1 in s that it is not.
- Pick #3. 2 in s that it is the same as #1 or #2, s-2 in s that it is not.

If we continue picking more, at ‘n’ picks, there is an n in s chance that it is the same as one we picked before and an s-n in s chance that it is not.

It’s easier to do the math if we phrase the question as a negative: what are the odds that we don’t ever pick the same number? We, therefore, make n picks and must successfully avoid picking the same number twice through any pick, and it gets progressively harder each time we pick a number.

The odds for each pick, however, are mutually independent which means that one pick doesn’t affect the odds of the next. The advantage of this is that we can simply multiply the odds:

`(s-1)/s * (s-2)/s * (s-3)/s ... (s-n)/s`

Now, that’s easy when n is small, but we already know that it works for very small values of n. The real question is when we pick millions, billions or even trillions of numbers. So we need to rewrite this as a factorial:

`(s-1)! / ( (s-n-1)! * s`

^{n} )

The problem is that big numbers are hard to calculate. We’re starting with 2^{100}, which is larger than even a 64-bit computer can comfortably work with, and we’re taking a factorial of that.

There are two ways to work with big numbers: 1. use logarithms and 2. use a bignum package. These numbers are big enough that they require both tricks. Fortunately, they are also big enough that we can cheat and approximate the factorial.

The code, available here goes through the steps and tries many different ways of getting the answer mostly to verify that I wasn’t cheating too much. It should work fine on a typical installation of Perl, but Math::BigInt::GMP would certainly help. Most of the functions, except the last one, will hang unless you’re using small numbers or have a powerful computer. For casual readers, I’ll simply show the results here. What it’s saying is that if you pick 2^{26} numbers from a search space of 2^{100}, there’s a 99.9999999999997% chance that none of them will be the same.

**log of expanded stirling approximation, Gosper's improvement**

(Data for before 2^{26} is omitted as the system didn’t use high enough precision.)

26 of 100 : 0.999999999999997

27 of 100 : 0.999999999999992

28 of 100 : 0.999999999999971

29 of 100 : 0.999999999999885

30 of 100 : 0.999999999999544 — about a billion objects

31 of 100 : 0.999999999998180

32 of 100 : 0.999999999992723

33 of 100 : 0.999999999970895

34 of 100 : 0.999999999883584

35 of 100 : 0.999999999534338

36 of 100 : 0.999999998137354

37 of 100 : 0.999999992549419

38 of 100 : 0.999999970197677

39 of 100 : 0.999999880790717

40 of 100 : 0.999999523162955 — about a trillion objects

41 of 100 : 0.999998092653185

42 of 100 : 0.999992370634572

43 of 100 : 0.999969482887531

44 of 100 : 0.999877937137777

45 of 100 : 0.999511837939888

46 of 100 : 0.998048781107475

47 of 100 : 0.992217938260243

48 of 100 : 0.969233234476343

49 of 100 : 0.882496902584595 — just shy of a quadrillion objects

This is certainly better than the assumption we had before that the chance of a collision was infinitesimal. But, really, what do these numbers mean? They say what they say: if your system identifies a trillion objects, you have a 99.9999% chance that there will not be one collision. So, if you were hoping for a headline that would say “GUIDs proven unworkable,” sorry to disappoint you.

I’d like to address two issues in a followup to this article: the effects of uniformity of the random number generator, and a better answer to the question of how you actually determine the optimal size of a unique identifier, based on various uses.

Posted in Binary implementation Tagged: Probability, Unique identifiers ]]>

*A relation value, in the proper context, is a structured assertion about the world.*

**Context** is important: if someone asks, “How many fingers do you have?” then the number 5, an integer value, is an assertion about the world. A value has meaning only inasmuch as it is placed in context.

As an example of what it means to place something in context, consider a computer program. By itself it is just a long stream of symbols, but if you run it in a computer it actually does something. This sonds like common sense, but in reality most people don’t understand this and often succumb to magical thinking. You see this often in the phrase “there ought to be a law” which carries the implicit assumption that merely writing a proscription against something will make it stop.

**Structure** means that you can derive new values from a value in a reproducible fashion. In particular, I’m talking about deterministic structure, such as the fact that you can add integers to get a certain sum, or decompose them to a product of primes. Nondeterministic structure would include statistical operations. For example, say you have a plain text representation of a book, written in English. You could analyze the frequency of various letters or letter combinations and assert with a high degree of confidence that the language is English, but there’s no mathematical operation that can say, for certain, that the language is X and you can’t take an argument from the book and algorithmically determine a counter-argument. The structure is there, the book definitely is written in English, it has sentences, ideas, themes, &c, but you’re forced to compare it indirectly with a mathematical model.

*A relation variable is a portion of the larger context adding meaning to the value it is assigned.*

The structure of a relation variable is typically represented as a table with labeled columns and unlabeled rows. The problem with any representation is that it tends to add stuff that shouldn’t be there. Here’s an example:

This is a pretty typical example of how people record information. There are some minor issues, such as the fact that this representation suggests ordered columns and rows, but neither are ordered in a relation value. The biggest issue that this representation has added that simply doesn’t exist in an individual relation variable is meaning. Even if you weren’t sure what a sign-in sheet was, you could plainly see a list of people signing their name in chronological order all on the same day, during business hours.

In a typical DBMS, you might have a comment that explained roughly what your table is for, sometimes euphemistically known as a natural language predicate, but that’s just a comment to you. All you can really attach to a variable is a set of constraints, saying what values aren’t allowed. Even the predicate logic view doesn’t get you very far. The idea is that each row is a proposition. A proposition is saying that p(a, b, c, d) is true. And the predicate it exists in is just the pattern of the proposition, it adds no meaning.

The reason I bring all this up is that plenty of people did buy into the idea that adding labels and comments can add meaning; the latest example of attempting this is XML. Mathematically, XML gets you nothing you didn’t already have with symbolic expressions, which date back at least to the ‘60s. (This isn’t to say that the technologies that XML replaced weren’t worse.)

**Conclusion** What I’m going to describe in later posts is a minimalist representation for relation values, based on a small addition to the relational algebra. We’ll explore some basic relation operators and derive a standard form.

Posted in Theory Tagged: Relational Algebra ]]>

My goal in writing this is to look at various applications and application domains, survey what they presently use to manage data, and how that might change. I will also examine the theoretical basis of what they’re trying to accomplish.

Posted in General ]]>